iTerm-PseKNC: a sequence-based tool for predicting bacterial transcriptional terminators
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty827
MinIONQC: fast and simple quality control for MinION sequencing data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty654
NEMO: cancer subtyping by integration of partial multi-omic data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz058
Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz447
FastSpar: rapid and scalable correlation estimation for compositional data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty734
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty905
Colocalization analyses of genomic elements: approaches, recommendations and challenges
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty835
Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty644
CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty865
Robust prediction of clinical outcomes using cytometry data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty768
WIlsON: Web-based Interactive Omics VisualizatioN
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty711
A natural upper bound to the accuracy of predicting protein stability changes upon mutations
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty880
Improving protein function prediction using protein sequence and GO-term similarities
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty751
Global importance of RNA secondary structures in protein-coding sequences
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty678
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty1010
copMEM: finding maximal exact matches via sampling both genomes
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty670
NanoShaper–VMD interface: computing and visualizing surfaces, pockets and channels in molecular systems
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty761
PhenoPro: a novel toolkit for assisting in the diagnosis of Mendelian disease
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz100
SolidBin: improving metagenome binning with semi-supervised normalized cut
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz253
The Encyclopedia of Proteome Dynamics: the KinoViewer
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty823
Surrogate minimal depth as an importance measure for variables in random forests
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz149
sAOP: linking chemical stressors to adverse outcomes pathway networks
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz570
Distance measures for tumor evolutionary trees
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz869
CoCo: RNA-seq read assignment correction for nested genes and multimapped reads
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz433
Long-term context-dependent genetic adaptation of the viral genetic cloud
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty891
simuG: a general-purpose genome simulator
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz424
The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasets
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz566
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty655
EROS-DOCK: protein-protein docking using exhaustive branch-and-bound rotational search
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz434
KEDDY: a knowledge‐based statistical gene set test method to detect differential functional protein‐protein interactions
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty686
ISDB: a database toolkit for storing and analyzing viral integration site data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty712
Simultaneous clustering of multiview biomedical data using manifold optimization
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz217
NFPws: a web server for delineating broadly neutralizing antibody specificities from serum HIV-1 neutralization data
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz097
A framework and an algorithm to detect low‐abundance DNA by a handy sequencer and a palm‐sized computer
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty663
RMTL: an R library for multi-task learning
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty831
When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty776
MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz414
A new statistic for efficient detection of repetitive sequences
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz262
DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz148
Accounting for ambiguity in ancestral sequence reconstruction
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz249
StructureProfiler: an all‐in‐one tool for 3D protein structure profiling
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty692
Compressed filesystem for managing large genome collections
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz192
GenomeWarp: an alignment-based variant coordinate transformation
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz218
A fully computational and reasonable representation for karyotypes
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz440
Kinpute: using identity by descent to improve genotype imputation
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz221
DEUS: an R package for accurate small RNA profiling based on differential expression of unique sequences
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz495
BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/bty967
Joint detection of germline and somatic copy number events in matched tumor-normal sample pairs
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz429
diSTruct v1.0: generating biomolecular structures from distance constraints
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz578
EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements
来源期刊:BioinformaticsDOI:10.1093/bioinformatics/btz702