JOURNAL OF PROTEOME RESEARCH

Evaluating False Transfer Rates from the Match-Between-Runs Algorithm with a Two-Proteome Model.

Optimized Fragmentation Improves the Identification of Peptides Cross-Linked by MS-Cleavable Reagents.

Evaluation of the Performance of Lipidyzer Platform and its Application in the Lipidomics Analysis in Mouse Heart and Liver.

ThermoRawFileParser: modular, scalable and cross-platform RAW file conversion.

A Blinded Testing of Function Annotation for uPE1 Proteins by the I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge.

Time Series Characteristics of Serum Branched-Chain Amino Acids for Early Diagnosis of Chronic Heart Failure.

Analysis of the Zika and Japanese encephalitis virus NS5 interactomes.

Identification of a Biomarker Panel for Early Detection of Lung Cancer Patients.

Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data.

Exploring the Arctic Charr Intestinal Glycome: Evidence of Increased N-Glycolylneuraminic Acid Levels and Changed Host-Pathogen Interactions in Response to Inflammation.

An Ovarian Protein Involved in Passive Avoidance of an Endoparasitoid To Evade Its Host Immune Response.

Systemic and local metabolic alterations in sleep deprivation-induced stress: A multi-platform mass- spectrometry-based lipidomics and metabolomics approach.

DO-MS: Data-Driven Optimization of Mass Spectrometry Methods.

Changes to the TDP-43 and FUS Interactomes Induced by DNA Damage

Proteomic Profile of a Chronic Binge-Ethanol Exposure Model.

glypy - An open source glycoinformatics library.

Type II Epithelial-mesenchymal transition upregulates protein N-glycosylation to maintain proteostasis and extracellular matrix production.

Integrated Lipidomics and Transcriptomics Characterization upon Aging-Related Changes of Lipid Species and Pathways in Human Bone Marrow Mesenchymal Stem Cells.

Analysis of the N-Glycoforms and Immunoactivity of a Chinese Yam (Dioscorea opposita Thunb.) Glycoprotein 30CYGP.

Comparing Data-Independent Acquisition and Parallel Reaction Monitoring in Their Abilities To Differentiate High-Density Lipoprotein Subclasses.

Colonic Proteome Signature in Immunoproteasome-Deficient Stressed Mice and Its Relevance for Irritable Bowel Syndrome.

Metabolic framework for the improvement of autism spectrum disorders by a modified ketogenic diet: a pilot study.

New Insights into Porcine Milk N-Glycome and the Potential Relation with Offspring Gut Microbiome.

Evaluating Calmodulin-Protein Interactions by Rapid Photoactivated Cross-Linking in Live Cells Metabolically Labeled with Photo-Methionine.

Tandem Mass Tag Based Quantitative Proteomics of Developing Sea Buckthorn Berries Reveals Candidate Proteins Related to Lipid Metabolism.

Deuterium-Free, Three-Plexed Peptide Diethylation for Highly Accurate Quantitative Proteomics.

Alterations in Lipid Profile of the Aging Kidney Identified by MALDI Imaging Mass Spectrometry.

An alternative strategy to explore missing proteins with low molecular weight.

An Improved Method for Measuring Absolute Metabolite Concentrations in Small Biofluid or Tissue Samples

NMR-based metabolomics for the assessment of inhaled pharmacotherapy in Chronic Obstructive Pulmonary Disease patients.

Identification of Molecular Targets of Dietary Grape-Mediated Chemoprevention of Ultraviolet B Skin Carcinogenesis: A Comparative Quantitative Proteomics Analysis.

Diagnostic and Prognostic Performance of Blood Plasma Glycan Features in the Women Epidemiology Lung Cancer (WELCA) Study.

Utilization of the Proteome Data Deposited in SRMAtlas for Validating the Existence of the Human Missing Proteins in GPM.

Evaluation of tumor interstitial fluid-extraction methods for proteome analysis: comparison of biopsy elution versus centrifugation.

Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure.

Mass Spectrometry-compatible Subcellular Fractionation for Proteomics.

Proteomic Profiling for Metabolic Pathways Involved in Interactive Effects of Elevated Carbon Dioxide and Nitrogen on Leaf Growth in a Perennial Grass Species.

Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.

Prediction and consequences of cofragmentation in metaproteomics.

Fecal metabolomics as a novel non-invasive method for short-term stress monitoring in beef cattle.

SAAVpedia: identification, functional annotation, and retrieval of single amino acid variants for proteogenomic interpretation.

Integrative proteomic analysis of digestive tract glycosidases from the invasive golden apple snail, Pomacea canaliculata.

Global proteomic analysis of lysine succinylation in zebrafish (Danio rerio).

An improved program for the estimation of protein theoretical relative molecular mass and uncertainty.

Phosphoproteomics reveals the biosynthesis of secondary metabolites in Catharanthus roseus under ultraviolet-B radiation.

Nuclear Magnetic Resonance Spectroscopy to Identify Metabolite Biomarkers of Nonresponsiveness to Targeted Therapy in Glioblastoma Tumor Stem Cells.

Comparative Proteomic Analysis of Histone Modifications upon acridone derivative 8a-Induced CCRF-CEM cells by Data Independent Acquisition.