Microbiome

Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

Alterations in the gut microbiome and metabolism with coronary artery disease severity

Maize synthesized benzoxazinoids affect the host associated microbiome

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

CAMISIM: simulating metagenomes and microbial communities

Interactions between a pathogenic Blastocystis subtype and gut microbiota: in vitro and in vivo studies

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases

Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome, based on tripartite network analysis

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage

Microbial indicators of environmental perturbations in coral reef ecosystems

Diversities and potential biogeochemical impacts of mangrove soil viruses

Advancing functional and translational microbiome research using meta-omics approaches

Diet-induced remission in chronic enteropathy is associated with altered microbial community structure and synthesis of secondary bile acids

Microbiome of vineyard soils is shaped by geography and management

Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera

Spatial segregation of the biological soil crust microbiome around its foundational cyanobacterium, Microcoleus vaginatus, and the formation of a nitrogen-fixing cyanosphere

Haem iron reshapes colonic luminal environment: impact on mucosal homeostasis and microbiome through aldehyde formation

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics

Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity

A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments

Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data

Discordant transmission of bacteria and viruses from mothers to babies at birth

The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile

Dynamic interaction network inference from longitudinal microbiome data

Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center

Ochratoxin A induces liver inflammation: involvement of intestinal microbiota

The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities

Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

Bacterial alkylquinolone signaling contributes to structuring microbial communities in the ocean

Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process

Impacts of florfenicol on the microbiota landscape and resistome as revealed by metagenomic analysis

Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study

Quantifying the contribution of microbial immigration in engineered water systems

Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area

A conceptual framework for the phylogenetically constrained assembly of microbial communities

Wd∗$W_{d}^{*}$-test: robust distance-based multivariate analysis of variance

Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination

Correction to: Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

Mining traits for the enrichment and isolation of not-yet-cultured populations

Antibiotic-modulated microbiome suppresses lethal inflammation and prolongs lifespan in Treg-deficient mice

2017 NIH-wide workshop report on “The Human Microbiome: Emerging Themes at the Horizon of the 21st Century”

Correction to: Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya