New Basis Set Exchange: An Open, Up-to-Date Resource for the Molecular Sciences Community
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00725
AGL-Score: Algebraic Graph Learning Score for Protein-Ligand Binding Scoring, Ranking, Docking, and Screening
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00334
Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00749
Identifying Structure-Property Relationships through SMILES Syntax Analysis with Self-Attention Mechanism
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00803
Graph Convolutional Neural Networks for Predicting Drug-Target Interactions
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00628
PACKMOL-Memgen: A Simple-To-Use, Generalized Workflow for Membrane-Protein-Lipid-Bilayer System Building
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00269
Imputation of Assay Bioactivity Data Using Deep Learning
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00768
AUTOSURF: A Freely Available Program To Construct Potential Energy Surfaces
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00784
Mechanisms Underlying Allosteric Molecular Switches of Metabotropic Glutamate Receptor 5
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00924
Machine Learning Prediction of H Adsorption Energies on Ag Alloys
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00657
FAME 3: Predicting the Sites of Metabolism in Synthetic Compounds and Natural Products for Phase 1 and Phase 2 Metabolic Enzymes
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00376
DAKB-GPCRs: An Integrated Computational Platform for Drug Abuse Related GPCRs
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00623
Interpretation of QSAR Models by Coloring Atoms According to Changes in Predicted Activity: How Robust Is It?
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00825
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00499
Random Forest Refinement of Pairwise Potentials for Protein-Ligand Decoy Detection
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00356
How Can Interleukin-1 Receptor Antagonist Modulate Distinct Cell Death Pathways?
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00565
Doping Effects on the Performance of Paired Metal Catalysts for the Hydrogen Evolution Reaction
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00179
Cosolvent-Based Protein Pharmacophore for Ligand Enrichment in Virtual Screening
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00371
Deep Transferable Compound Representation across Domains and Tasks for Low Data Drug Discovery
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00626
Using Membrane Partitioning Simulations To Predict Permeability of Forty-Nine Drug-Like Molecules
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00744
Machine Learning Guided Atom Mapping of Metabolic Reactions
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00434
A Multiscale Model for the Self-Assembly of Coat Proteins in Bacteriophage MS2
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00514
Rational Use of Heterogeneous Data in Quantitative Structure-Activity Relationship (QSAR) Modeling of Cyclooxygenase/Lipoxygenase Inhibitors
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00617
Molecular Modeling Investigation of the Interaction between Humicola insolens Cutinase and SDS Surfactant Suggests a Mechanism for Enzyme Inactivation
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00857
A New Class of Superhalogen Based Anion Receptor in Li-Ion Battery Electrolytes
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00035
Energetic Fingerprinting of Ligand Binding to Paralogous Proteins: The Case of the Apoptotic Pathway
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00765
Computational Prediction of Site of Metabolism for UGT-Catalyzed Reactions
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00851
Chemical Insight on Decreased Sensitivity of CL-20/TNT Cocrystal Revealed by ReaxFF MD Simulations
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00952
Isomerization and Decomposition of 2-Methylfuran with External Forces
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00352
Validation of the Generalized Force Fields GAFF, CGenFF, OPLS-AA, and PRODRGFF by Testing Against Experimental Osmotic Coefficient Data for Small Drug-Like Molecules
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00552
Molecular Insights into the Substrate-Assisted Mechanism of Viral DNA 3′-End Processing in Intasome of Prototype Foamy Virus Integrase from Molecular Dynamic and QM/MM Studies
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00276
Development of New Methods Needs Proper Evaluation - Benchmarking Sets for Machine Learning Experiments for Class A GPCRs
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00689
Effects of Single Nucleotide Polymorphisms on the Binding of Afatinib to EGFR: A Potential Patient Stratification Factor Revealed by Modeling Studies
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00491
Influence of the Structural Accuracy of Homology Models on Their Applicability to Docking-Based Virtual Screening: The β2 Adrenergic Receptor as a Case Study
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00380
Molecular Dynamics Simulations of Substrate Release from Trypanosoma cruzi UDP-Galactopyranose Mutase
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00675
Ligity: A Non-Superpositional, Knowledge-Based Approach to Virtual Screening
来源期刊:Journal of Chemical Information and ModelingDOI:10.1021/acs.jcim.8b00779
Enhanced Sampling Simulations of Ligand Unbinding Kinetics Controlled by Protein Conformational Changes
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00523
How to Model Inter- and Intramolecular Hydrogen Bond Strengths with Quantum Chemistry
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00132
Computational Prediction of a New ADMET Endpoint for Small Molecules: Anticommensal Effect on Human Gut Microbiota
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00600
EncoderMap(II): Visualizing Important Molecular Motions with Improved Generation of Protein Conformations
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00675
Fantastic Liquids and Where To Find Them: Optimizations of Discrete Chemical Space
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00087
Theoretical Investigation of the Structural Characteristics in the Active State of Akt1 Kinase
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00506
Molecular Mechanism Regarding Allosteric Modulation of Ligand Binding and the Impact of Mutations on Dimerization for CCR5 Homodimer
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00850
Effects of Metal Ions on Aβ42 Peptide Conformations from Molecular Simulation Studies
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00098
Strong Enrichment of Aromatic and Sulfur-Containing Residues in Ligand-Protein Binding Sites
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00582
Unsupervised Classification of G-Protein Coupled Receptors and Their Conformational States Using IChem Intramolecular Interaction Patterns
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00054
Quasiclassical Correlation Functions from the Wigner Density Using the Stability Matrix
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00081
Multilabel and Missing Label Methods for Binary Quantitative Structure-Activity Relationship Models: An Application for the Prediction of Adverse Drug Reactions
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00611
Probing the Functional Topology of a pH-Dependent Triple Helix DNA Nanoswitch Family through Gaussian Accelerated MD Simulation
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.9b00133
The Necessity of d-Thr in the New Antibiotic Teixobactin: A Molecular Dynamics Study
来源期刊:Journal of chemical information and modelingDOI:10.1021/acs.jcim.8b00949