IEEE-ACM Transactions on Computational Biology and Bioinformatics

KATZLGO: Large-Scale Prediction of LncRNA Functions by Using the KATZ Measure Based on Multiple Networks

Coupling Effect of Double Lungs on a VCV Ventilator with Automatic Secretion Clearance Function

ILDMSF: Inferring Associations between Long non-coding RNA and Disease Based on Multi-similarity Fusion.

Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks

A Global and Local Enhanced Residual U-Net for Accurate Retinal Vessel Segmentation.

Efficient Detection of Communities in Biological Bipartite Networks

A Deep Learning Approach for Targeted Contrast-Enhanced Ultrasound Based Prostate Cancer Detection

Causal Reasoning on Boolean Control Networks Based on Abduction: Theory and Application to Cancer Drug Discovery

GLAlign: A Novel Algorithm for Local Network Alignment

Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation

EBWS: Essential Bioinformatics Web Services for Sequence Analyses

Learning to Refine Expansion Terms for Biomedical Information Retrieval Using Semantic Resources

A Multi-Laplacian Prior and Augmented Lagrangian Approach to the Exploratory Analysis of Time-Varying Gene and Transcriptional Regulatory Networks for Gene Microarray Data

DeepSeed Local Graph Matching for Densely Packed Cells Tracking.

A Novel Scaffolding Algorithm Based on Contig Error Correction and Path Extension

Systematic Inspection of the Clinical Relevance of TP53 Missense Mutations in Gastric Cancer

A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering.

Bayesian Network Construction and Genotype-Phenotype Inference Using GWAS Statistics

DrPOCS: Drug Repositioning Based on Projection Onto Convex Sets

Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny

FastEtch: A Fast Sketch-Based Assembler for Genomes

Pareto Optimization of Combinatorial Mutagenesis Libraries

An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae

CNAPE: A Machine Learning Method for Copy Number Alteration Prediction from Gene Expression.

Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data

A New Algorithm for Counting Independent Motifs in Probabilistic Networks

Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model.

RNA Secondary Structure Prediction with Pseudoknots using Chemical Reaction Optimization Algorithm.

Identifying Candidate Genetic Associations with MRI-Derived AD-Related ROI via Tree-Guided Sparse Learning

Cross-Species Protein Function Prediction with Asynchronous-Random Walk.

A Cascade of 2.5D CNN and Bidirectional CLSTM Network for Mitotic Cell Detection in 4D Microscopy Image.

Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition

A 2-Approximation Scheme for Sorting Signed Permutations by Reversals, Transpositions, Transreversals, and Block-Interchanges

Designing Optimal Experiments to Discriminate Interaction Graph Models

Cophenetic Median Trees

A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes.

3gClust: Human Protein Cluster Analysis

Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-dimensional Omics Data.

Improved Adverse Drug Event Prediction Through Information Component Guided Pharmacological Network Model (IC-PNM).

Probing the Relation Between Community Evolution in Dynamic Residue Interaction Networks and Xylanase Thermostability.

RNASeqR: an R package for automated two-group RNA-Seq analysis workflow.

A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach.

Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry

Accelerated analysis of Boolean gene regulatory networks via reconfigurable hardware.

Semi-supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets.

Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks.

Exploring Frequented Regions in Pan-Genomic Graphs